novosparc

Spatial reconstructor

Software tool to predict spatial locations of single cells in tissue using single-cell RNA sequencing data

GitHub

126 stars
12 watching
41 forks
Language: Jupyter Notebook
last commit: about 1 year ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
yoseflab/trapes Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. 14
neurosurgery-brain-tumor-center-diazlab/scell Software tool for analyzing single-cell RNA-seq data from brain tumor samples. 38
nasqar/seuratwizard A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. 13
tanaylab/metacell An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. 108
raphael-group/paste2 A software framework for aligning and reconstructing spatial transcriptomics data from non-overlapping samples 29
yoseflab/fastproject Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions 35
yunshun/singlecellworkshop An educational workshop on single-cell RNA-seq analysis using the Seurat R package 0
navinlabcode/celltrek A toolkit for mapping single cells to spatial coordinates in tissue sections based on scRNA-seq and ST data 108
kstreet13/bioc2020trajectories An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference 25
yulab-smu/ggsc A package for visualizing single cell and spatial transcriptomics data using R 43
wycwycpku/rscore Tools and utilities for single-cell RNA-seq data analysis with network features 25