paste2
Data alignment tool
Software to align and reconstruct 3D structures from overlapping spatial transcriptomics data
Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
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Language: Jupyter Notebook
last commit: over 2 years agoRelated projects:
| Repository | Description | Stars |
|---|---|---|
| raphael-group/paste | A method for aligning and integrating spatial transcriptomics data by leveraging both gene expression similarity and spatial distances | 79 |
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 gao-lab/slat | A software package for aligning single-cell spatial omics data using deep learning and graph neural networks | 83 |
 zhoux85/staligner | Tool for aligning and integrating spatially resolved transcriptomics data using machine learning algorithms | 29 |
 broadinstitute/tangram | A Python package for aligning single-cell transcriptomic data with spatial gene expression data. | 261 |
 su-informatics-lab/dstg | Software implementation of graph-based AI method for decomposing spatial transcriptomics data | 35 |
 dmcable/spacexr | Software package for cell type identification and differential expression in spatial transcriptomics | 322 |
 rajewsky-lab/novosparc | Software tool to predict spatial locations of single cells in tissue using single-cell RNA sequencing data | 126 |
 teichlab/spatialde | Tools and methods to analyze gene expression data in relation to spatial coordinates | 151 |
 hallvaaw/scifer | Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques | 0 |
 jw156605/matcher | A tool for integrating single cell transcriptomic and epigenomic data by aligning multiple datasets on a common manifold | 21 |
 swainasish/spatialprompt | A software tool for analyzing spatial transcriptomics data by separating cell types from location information | 12 |
 brainglobe/brainreg | Automated 3D brain registration software for aligning template brains to sample images. | 124 |
 machinalis/yalign | Automates the process of extracting parallel sentences from comparable corpora to aid in statistical machine translation | 127 |
 prosodylab/prosodylab.alignertools | A package of scripts to prepare data for alignment in speech processing | 12 |