MATCHER

Data aligner

A tool for integrating single cell transcriptomic and epigenomic data by aligning multiple datasets on a common manifold

MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epigenomic data. See Welch et al. (2017) for more details: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1269-0

GitHub

21 stars
4 watching
5 forks
Language: Jupyter Notebook
last commit: over 7 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
zhoux85/staligner Tool for aligning and integrating spatially resolved transcriptomics data using machine learning algorithms 29
raphael-group/paste2 A software framework for aligning and reconstructing spatial transcriptomics data from non-overlapping samples 29
hallvaaw/scifer Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques 0
ernestojimenezruiz/logmap-matcher An ontology alignment and repair system with built-in reasoning and inconsistency repair capabilities. 123
guitarbum722/align An application and library for aligning text with flexible formatting options. 84
dissectmalware/pysamesame A Python tool for manipulating Unicode characters with similar visual representations. 23
sergree/matchering An audio matching and mastering tool that uses machine learning to adapt the sound of one track to match another 1,782
gao-lab/slat A software package for aligning single-cell spatial omics data using deep learning and graph neural networks 80
seamusabshere/fuzzy_match A tool for finding similar records in large datasets using string similarity and regular expression rules. 676
trigeorgis/mdm A TensorFlow implementation of a recurrent face alignment process 124
vim-scripts/align A Vim plugin that provides functions to align text based on specified separators and formatting options. 134
gemslab/regal An implementation of a graph alignment method based on representation learning and matrix factorization. 92
lowerquality/gentle A tool for aligning speech with text by analyzing audio and providing an output transcript 1,453
broadinstitute/tangram A Python package for aligning single-cell transcriptomic data with spatial gene expression data. 258
cmesher/inuktitutalignerdata Tools for aligning laboratory speech production data 3