scTCRseq
TCR recovery
Recovering TCR sequences from single-cell RNA-seq data using a Python pipeline
Processing of single cell RNAseq data for the recovery of TCRs in python
26 stars
15 watching
4 forks
Language: Python
last commit: almost 4 years ago
Linked from 1 awesome list
pythonrna-seqsingle-cell-rna-seq
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 scverse/scirpy | Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 220 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 yoseflab/trapes | Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |
 kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
 crazyhottommy/rna-seq-analysis | A collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows | 936 |
 lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 hoohm/dropseqpipe | A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. | 147 |
 bcbio/bcbio-nextgen | A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 994 |
 scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
 pachterlab/kallistobustools | A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. | 115 |
| pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 153 |
 griffithlab/rnaseq_tutorial | An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud | 1,337 |