RNA-seq-analysis
RNA analysis toolbox
A collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows
RNAseq analysis notes from Ming Tang
951 stars
78 watching
300 forks
Language: Python
last commit: over 3 years ago
Linked from 2 awesome lists
rna-seqsnakemake
seandavi/awesome-single-cell
danielecook/awesome-bioinformaticsRelated projects:
| Repository | Description | Stars |
|---|---|---|
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 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 100 |
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 pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 157 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 191 |
 hoohm/dropseqpipe | A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. | 147 |
 elementolab/sctcrseq | An open-source Python pipeline for processing single-cell RNA sequencing data to recover T cell receptor sequences. | 26 |
 yeolab/outrigger | Automates detection and quantification of alternative splicing events from RNA seq data using graph databases. | 65 |
 hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
| kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
 htseq/htseq | A Python library to facilitate analysis of data from high-throughput sequencing experiments. | 95 |
 wycwycpku/rscore | Tools and utilities for single-cell RNA-seq data analysis with network features | 25 |