dropSeqPipe
by Hoohm
A SingleCell RNASeq pre-processing snakemake workflow
AI summary
RNASeq pipeline
A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots.
- stars
- 147
- forks
- 47
- watching
- 9
- awesome list
- 1
Similar projects
Found by comparing what the projects do, not just their names.
Single-cell RNA-seq analysis pipeline
A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments
RNA-seq pipeline
An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud
RNA seq processor
A Nextflow pipeline for processing RNA-seq data
RNA analysis toolbox
A collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows
TCR data recovery pipeline
An open-source Python pipeline for processing single-cell RNA sequencing data to recover T cell receptor sequences.
RNA seq pipeline
A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools.
RNA-seq analyzer
A workflow generator for single-cell RNA-seq data analysis
Pipeline
A pipeline for quantifying genomic features from short read data using Nextflow and various software components.
Splice analyzer
Automates detection and quantification of alternative splicing events from RNA seq data using graph databases.
Seq analysis pipeline
A high-level configuration file drives parallel variant calling and analysis on sequencing data.
UMI pipeline
A fast and flexible pipeline for processing RNA-seq data with UMIs
RNA seq pipeline
A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow
RNA-seq pipeline
Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers
RNA simulator
A tool for simulating single-cell RNA sequencing data for research purposes.
RNA seq analyzer
An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data.
Featured in 1 awesome list
Each link jumps to the spot where the list mentions dropSeqPipe.
