rnaseq

RNA seq analyzer

An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

GitHub

916 stars
156 watching
708 forks
Language: Nextflow
last commit: 13 days ago
Linked from 1 awesome list

nextflownf-corepipelinernarna-seqworkflow

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nf-core/smrnaseq An automated analysis pipeline for small RNA sequencing data 74
nf-core/rnafusion A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data 143
nf-core/chipseq A bioinformatics analysis pipeline for processing ChIP-seq data 194
nf-core/lncpipe Analyzes long non-coding RNA molecules from RNA-seq data 33
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
dowell-lab/rnaseq-flow A Nextflow pipeline for processing RNA-seq data 8
abreschi/shortrna-nf A pipeline tool for processing short RNA-seq data from start to finish. 3
cbcrg/kallisto-nf A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow 22
biocorecrg/allele_specific_rnaseq A workflow for analyzing allele-specific RNA-seq data using Nextflow and various bioinformatics tools 9
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
nf-core/sarek Automated workflow for detecting germline or somatic variants in genomic sequencing data 409
nf-core/eager Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability 148
cbcrg/grape-nf A pipeline for RNA-Seq analyses using nextflow 2
nf-core/methylseq A bioinformatics pipeline for analyzing methylation sequencing data 140
griffithlab/rnaseq_tutorial An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud 1,337