methylseq

Methylation analysis pipeline

A bioinformatics pipeline for analyzing methylation sequencing data

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

GitHub

140 stars
149 watching
145 forks
Language: Nextflow
last commit: 7 days ago
Linked from 1 awesome list

bisulfite-sequencingdna-methylationem-seqepigenomeepigenomicsmethyl-seqnextflownf-corepbatpipelinerrbsworkflow

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nf-core/chipseq A bioinformatics analysis pipeline for processing ChIP-seq data 194
nf-core/smrnaseq An automated analysis pipeline for small RNA sequencing data 74
nf-core/rnaseq An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. 916
nf-core/eager Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability 148
nf-core/sarek Automated workflow for detecting germline or somatic variants in genomic sequencing data 409
lkremer/scbs A command-line tool for analyzing single-cell DNA methylation data 11
cdcgov/mycosnp-nf An analysis pipeline for whole genome sequencing of fungal organisms. 37
nf-core/rnafusion A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data 143
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
nf-core/mag An assembly and binning pipeline for analyzing metagenomes 216
nmdp-bioinformatics/flow-blast-hml Automates sequence analysis from HML files using blast algorithms 1
andreaskapou/melissa A software framework for analyzing single-cell DNA methylation data using Bayesian methods 14
nf-core/hlatyping An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow 63
bcbio/bcbio-nextgen A high-level configuration file drives parallel variant calling and analysis on sequencing data. 994
nf-core/tools Provides a set of reusable Python functions and tools for bioinformatics and workflow management. 242