mag
Metagenome assembler
An assembly and binning pipeline for analyzing metagenomes
Assembly and binning of metagenomes
219 stars
162 watching
111 forks
Language: Nextflow
last commit: 11 months ago
Linked from 1 awesome list
annotationassemblybinningbioinformaticslong-read-sequencingmetagenomesmetagenomicsnanoporenanopore-sequencingnextflownf-corepipelineworkflow
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
| nf-core/viralrecon | An assembly and variant calling pipeline for viral samples | 128 |
| nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
| nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
| nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 199 |
| nf-core/modules | A repository of pre-built tool modules for efficient pipeline development in Nextflow. | 287 |
| nf-core/tools | Provides a set of reusable Python functions and tools for bioinformatics and workflow management. | 245 |
| nf-core/eager | Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 152 |
 biocorecrg/transcriptome_assembly | De novo and reference-based transcriptome assembly workflow using Nextflow | 3 |
| biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data | 23 |
| nf-core/pangenome | Constructs a graph from a collection of genetic sequences while preserving large-scale variation | 78 |
 mhh-rcug/nf_wochenende | A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance | 13 |
| nf-core/sarek | A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
| nf-core/methylseq | Bioinformatics pipeline for analyzing DNA methylation data from bisulfite sequencing | 148 |
 cdcgov/mycosnp-nf | An analysis pipeline for whole genome sequencing of fungal organisms. | 38 |
 joshua-d-campbell/nf-gatk_exome_preprocess | Automates preprocessing of whole exome sequencing data using GATK best practices | 10 |