tools

Bioinformatics toolkit

Provides a set of reusable Python functions and tools for bioinformatics and workflow management.

Python package with helper tools for the nf-core community.

GitHub

245 stars
151 watching
192 forks
Language: Python
last commit: almost 2 years ago
Linked from 1 awesome list

bioinformaticslinterlintingnextflownf-corepipelinepythonworkflow

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