tools

nextflow-io/nf-hack1710

Bioinformatics pipeline project

An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis

lancelafontaine/bioinformatics-compbio-tools50

Toolset

A curated list of bioinformatics and computational biology tools for researchers.

nf-core/rnafusion147

Gene fusion analyzer

A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data

nf-core/hlatyping63

HLA typist

An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow

biocorecrg/bionextflow26

Pipeline framework

A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics

nf-core/chipseq199

ChIP-seq processor

A bioinformatics analysis pipeline for processing ChIP-seq data

nf-core/mag219

Metagenome assembler

An assembly and binning pipeline for analyzing metagenomes

nathanrw/nuklear-cffi38

GUI library wrapper

A Python binding for a C library used in graphical user interfaces.

nf-core/modules287

Pipeline module pack

A repository of pre-built tool modules for efficient pipeline development in Nextflow.

jdidion/biotools590

Bioinformatics toolkit

A collection of bioinformatics tools and resources organized by topic and category

nextflow-io/nf-hack17-tutorial32

Nextflow Tutorial

A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines

ncbi-hackathons/spew26

Pipeline wrapper

Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.

nf-core/eager152

DNA analysis pipeline

Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability

iarcbioinfo/iarc-nf48

NGS pipelines

Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.

nf-core/smrnaseq74

RNA seq processor

An automated analysis pipeline for small RNA sequencing data