SPeW

Pipeline wrapper

Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.

Automatic Packaging and Distribution of Bioinformatics Pipelines

GitHub

26 stars
17 watching
8 forks
Language: Python
last commit: about 7 years ago
Linked from 1 awesome list

dockernextflowpipelinerna-seq-pipeline

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nextflow-io/nf-hack17 An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis 10
ncbi-hackathons/atacflow A Nextflow-based pipeline for performing ATAC-seq analysis 14
papenfusslab/bioshake A tool for defining and compiling bioinformatics workflows in Haskell using a build system 55
bcbio/bcbio-nextgen A high-level configuration file drives parallel variant calling and analysis on sequencing data. 994
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
fredericlemoine/rna-pipeline A Nextflow-based pipeline for processing RNA-Seq data using Docker containers 4
hadrieng/pipelines A collection of reusable computational pipelines for bioinformatics tasks. 2
biocorecrg/bionextflow A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics 26
biocorecrg/mop2 A Nextflow-based workflow for processing and analyzing nanopore RNA sequencing data 23
nextflow-io/crg-course-nov16 A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline 23
nextflow-io/nf-hack17-tutorial A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines 32
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
crickbabs/babs-adnaseq A Nextflow pipeline script for processing ancient DNA sequencing data. 2
guigolab/ipsa-nf An integrative pipeline for analyzing splicing events from RNA sequencing data 9
cbcrg/grape-nf A pipeline for RNA-Seq analyses using nextflow 2