bioshake
by PapenfussLab
Bioinformatics pipelines with Haskell and Shake
AI summary
Bioinformatics pipeline compiler
A tool for defining and compiling bioinformatics workflows in Haskell using a build system
- stars
- 55
- forks
- 7
- watching
- 6
- awesome list
- 1
Similar projects
Found by comparing what the projects do, not just their names.
Pipeline wrapper
Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.
Bioinformatics pipelines
A collection of reusable computational pipelines for bioinformatics tasks.
Bioinformatics pipeline project
An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis
Build workflow manager
Utility for managing builds and complex workflows in bioinformatics
NGS pipelines
Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.
Bioinformatics toolkit
Provides a set of reusable Python functions and tools for bioinformatics and workflow management.
Pipeline framework
A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics
Splicing analyzer
An integrative pipeline for analyzing splicing events from RNA sequencing data
Genome pipeline
A Nextflow pipeline for running structural variation callers on whole genome sequencing data
Bioinformatics tool
A library for bioinformatics using Smalltalk
Pipeline
A Nextflow pipeline script for processing ancient DNA sequencing data.
Bioinformatics workflow optimizer
An open-source platform to optimize and streamline bioinformatics analysis workflows by estimating system resource requirements.
Toolset
A curated list of bioinformatics and computational biology tools for researchers.
Genomic SV caller
An automation workflow for detecting structural variations in genomic data using the smoove toolset
RNA pipeline
A Nextflow-based pipeline for processing RNA-Seq data using Docker containers
Featured in 1 awesome list
Each link jumps to the spot where the list mentions bioshake.
