bioshake
Bioinformatics pipeline compiler
A tool for defining and compiling bioinformatics workflows in Haskell using a build system
Bioinformatics pipelines with Haskell and Shake
55 stars
6 watching
7 forks
Language: Haskell
last commit: about 6 years ago
Linked from 1 awesome list
pditommaso/awesome-pipelineRelated projects:
| Repository | Description | Stars |
|---|---|---|
 ncbi-hackathons/spew | Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations. | 26 |
 hadrieng/pipelines | A collection of reusable computational pipelines for bioinformatics tasks. | 2 |
 nextflow-io/nf-hack17 | An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis | 10 |
 evoldoers/biomake | Utility for managing builds and complex workflows in bioinformatics | 103 |
 iarcbioinfo/iarc-nf | Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data. | 48 |
 nf-core/tools | Provides a set of reusable Python functions and tools for bioinformatics and workflow management. | 245 |
 biocorecrg/bionextflow | A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics | 26 |
 guigolab/ipsa-nf | An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
 nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 16 |
 hernanmd/biosmalltalk | A library for bioinformatics using Smalltalk | 17 |
 crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
 liyao001/bioqueue | An open-source platform to optimize and streamline bioinformatics analysis workflows by estimating system resource requirements. | 29 |
 lancelafontaine/bioinformatics-compbio-tools | A curated list of bioinformatics and computational biology tools for researchers. | 50 |
 brwnj/smoove-nf | An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |
 fredericlemoine/rna-pipeline | A Nextflow-based pipeline for processing RNA-Seq data using Docker containers | 4 |