IARC-nf
NGS pipelines
Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.
List of IARC bioinformatics nextflow pipelines
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bioinformaticscancernextflowngspipeline
Related projects:
| Repository | Description | Stars |
|---|---|---|
 andremrsantos/next-pipes-lghm | A collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab | 3 |
 hadrieng/pipelines | A collection of reusable computational pipelines for bioinformatics tasks. | 2 |
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
| nextflow-io/nf-hack17 | An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis | 10 |
| iarcbioinfo/gvcf_pipeline-nf | Generates GVCF from BAM files using GenomeAnalysisTK with realignment and recalibration steps | 4 |
 biocorecrg/bionextflow | A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics | 26 |
 cbcrg/grape-nf | A pipeline for RNA-Seq analyses using nextflow | 2 |
| nextflow-io/crg-course-nov16 | A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
 nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
 nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 16 |
| iarcbioinfo/bametrics-nf | Tools for computing average metrics from reads overlapping given positions | 1 |
 crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
 crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
 guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 ncbi-hackathons/spew | Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations. | 26 |