wgs-structvar

Genome pipeline

A Nextflow pipeline for running structural variation callers on whole genome sequencing data

Whole Genome Sequenceing Structural Variation Pipelines

GitHub

16 stars
47 watching
7 forks
Language: Nextflow
last commit: over 7 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
ncsa/genomicscortextvarnextflowA Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm.2
crg-cnag/callings-nfA Nextflow pipeline for RNA sequencing variant calling with GATK best practices132
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
brwnj/smoove-nfAn automation workflow for detecting structural variations in genomic data using the smoove toolset12
andremrsantos/next-pipes-lghmA collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab3
guigolab/grape-nfAutomated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers37
nf-core/sarekA workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools.412
iarcbioinfo/iarc-nfProvides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.48
cbcrg/grape-nfA pipeline for RNA-Seq analyses using nextflow2
hadrieng/pipelinesA collection of reusable computational pipelines for bioinformatics tasks.2
nextflow-io/crg-course-nov16A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline23
cdcgov/mycosnp-nfAn analysis pipeline for whole genome sequencing of fungal organisms.38
crickbabs/babs-adnaseqA Nextflow pipeline script for processing ancient DNA sequencing data.2
biocorecrg/bionextflowA collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics26
cbcrg/kallisto-nfA tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow22