GenomicsCortextVarNextflow
Variant detector
A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm.
2 stars
13 watching
0 forks
Language: Nextflow
last commit: over 5 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
nf-core/sarek | Automated workflow for detecting germline or somatic variants in genomic sequencing data | 409 |
crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 15 |
nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 72 |
broadinstitute/infercnv | Software to detect copy number variations from single-cell RNA-seq data using probabilistic modeling and machine learning algorithms | 565 |
zeeev/wham | Software tool for detecting and analyzing structural variants in genomes | 103 |
guigolab/ipsa-nf | An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
cdcgov/mycosnp-nf | An analysis pipeline for whole genome sequencing of fungal organisms. | 37 |
jefworks-lab/honeybadger | An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data | 96 |
baidu-research/ncrf | Automated detection of cancer metastasis using deep learning and conditional random fields. | 756 |
nlawlor/v-sva | An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data | 7 |
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
nf-core/hlatyping | An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow | 63 |
nmdp-bioinformatics/flow | Consensus assembly and variant calling workflow utilizing Nextflow for efficient processing of biological data | 12 |
brwnj/smoove-nf | An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |