GenomicsCortextVarNextflow
Variant detector
A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm.
2 stars
13 watching
0 forks
Language: Nextflow
last commit: over 5 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
| A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
| A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
| A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 16 |
| A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
| Software to detect copy number variations from single-cell RNA-seq data using probabilistic modeling and machine learning algorithms | 579 |
| Software tool for detecting and analyzing structural variants in genomes | 104 |
| An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
| An analysis pipeline for whole genome sequencing of fungal organisms. | 38 |
| An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data | 98 |
| Detects cancer metastasis in whole slide images using deep learning and conditional random fields | 757 |
| An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data | 7 |
| A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
| An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow | 63 |
| Consensus assembly and variant calling workflow utilizing Nextflow for efficient processing of biological data | 12 |
| An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |