infercnv
Copy Number Variation Detector
Software to detect copy number variations from single-cell RNA-seq data using probabilistic modeling and machine learning algorithms
Inferring CNV from Single-Cell RNA-Seq
579 stars
40 watching
166 forks
Language: R
last commit: 3 months ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 icbi-lab/infercnvpy | A Python library that infers copy number variation events from single-cell transcriptomics data. | 140 |
 ataudt/aneufinder | Detects and characterizes copy-number variations in single-cell whole genome sequencing data using computational models | 17 |
 nlawlor/v-sva | An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data | 7 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 94 |
 navinlabcode/copykat | A tool for inferring genomic copy number and subclonal structure from single cell RNA sequencing data. | 216 |
 jefworks-lab/honeybadger | An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data | 98 |
 ncsa/genomicscortextvarnextflow | A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm. | 2 |
 chris-mcginnis-ucsf/doubletfinder | Detects doublets in single-cell RNA sequencing data by analyzing cell distances and proportions of artificial neighbors | 424 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 infiziert90/getnative | Determines the native resolution of upscaled material, typically anime, by applying various image processing algorithms. | 224 |
 baidu-research/ncrf | Detects cancer metastasis in whole slide images using deep learning and conditional random fields | 757 |
 zeeev/wham | Software tool for detecting and analyzing structural variants in genomes | 104 |
 cahanlab/singlecellnet | A package for classifying single-cell RNA-Seq data across species and platforms | 131 |
| broadinstitute/cell-health | Predicts cell health from morphological profiles using machine learning and image analysis | 35 |