copykat
Copy number analyzer
A tool for inferring genomic copy number and subclonal structure from single cell RNA sequencing data.
216 stars
10 watching
55 forks
Language: R
last commit: 8 months ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 icbi-lab/infercnvpy | A Python library that infers copy number variation events from single-cell transcriptomics data. | 140 |
 ataudt/aneufinder | Detects and characterizes copy-number variations in single-cell whole genome sequencing data using computational models | 17 |
| navinlabcode/celltrek | A toolkit for mapping single cells to spatial coordinates in tissue sections based on scRNA-seq and ST data | 109 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 broadinstitute/infercnv | Software to detect copy number variations from single-cell RNA-seq data using probabilistic modeling and machine learning algorithms | 579 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
 robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
 pachterlab/sircel | A tool for identifying and quantifying cell barcodes from single-cell genomics sequencing data. | 41 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 94 |
 sridnona/cb_sniffer | A tool that identifies and annotates genetic variants in single-cell RNA sequencing data by matching mutant and reference barcodes. | 44 |
 kieranrcampbell/clonealign | A software package that uses Bayesian inference to assign gene expression estimates from single-cell RNA-seq and DNA-seq data to specific cancer clones. | 32 |
 cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |