cb_sniffer

cortes-ciriano-lab/scomatic177

Mutation detector

A tool for detecting somatic variants in single-cell data

nlawlor/v-sva7

Variation detector

An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data

zjufanlab/scdeepsort100

Cell type annotation tool

A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning

zjufanlab/sccatch219

Cell annotator

Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes

rabadanlab/sctda7

Single-cell RNA-seq analyzer

An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations

wittelab/orchid31

Cancer mutation analyzer

An annotation and machine learning framework for analyzing cancer mutations

navinlabcode/copykat216

Copy number analyzer

A tool for inferring genomic copy number and subclonal structure from single cell RNA sequencing data.

mbj/mutant2K

Code simplifier

Automated code review tool with mutation testing to simplify and improve code quality

iosonofabio/singlet13

Data analyzer

Analyzes single cell RNA sequence data with quantitative phenotypes

plantandfoodresearch/variantanalysis5

Variant analyzer

A bioinformatic pipeline for analyzing genetic variants in genomic data

qile0317/apackoftheclones14

Clonal analyzer

Tools for visualizing and analyzing clonal expansion in immune cell populations

jhu99/scbean16

Multi-omics analyzer

Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq

solomonsklash/sri-check13

SRI scanner

A tool to identify missing Subresource Integrity attributes in web resources

testingresearchillinois/srciror13

Mutation tool

A mutation tool for testing source code and intermediate representation (IR) written in C/C++

kharchenkolab/numbat171

Cell analysis tool

Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells