cb_sniffer

Variant annotator

A tool that identifies and annotates genetic variants in single-cell RNA sequencing data by matching mutant and reference barcodes.

mutation(barcode) caller for 10x single cell data

GitHub

43 stars
4 watching
16 forks
Language: Python
last commit: over 4 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
cortes-ciriano-lab/scomatic A tool for detecting somatic variants in single-cell data 170
nlawlor/v-sva An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data 7
zjufanlab/scdeepsort A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning 99
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
wittelab/orchid An annotation and machine learning framework for analyzing cancer mutations 31
navinlabcode/copykat A tool for inferring genomic copy number and subclonal structure from single cell RNA sequencing data. 209
mbj/mutant Automated code review tool with mutation testing to simplify and improve code quality 1,956
iosonofabio/singlet Analyzes single cell RNA sequence data with quantitative phenotypes 13
plantandfoodresearch/variantanalysis A bioinformatic pipeline for variant calling from sequencing data, including alignment and quality control steps. 5
qile0317/apackoftheclones Software package to visualize clonal expansion in single-cell immune repertoire data 14
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
solomonsklash/sri-check A tool to identify missing Subresource Integrity attributes in web resources 13
testingresearchillinois/srciror A mutation tool for testing source code and intermediate representation (IR) written in C/C++ 13
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166