VariantAnalysis
Variant analyzer
A bioinformatic pipeline for analyzing genetic variants in genomic data
A bioinformatic variant calling pipeline
5 stars
10 watching
4 forks
Language: Jupyter Notebook
last commit: over 8 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
| An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
| An annotation and machine learning framework for analyzing cancer mutations | 31 |
| A tool that identifies and annotates genetic variants in single-cell RNA sequencing data by matching mutant and reference barcodes. | 44 |
| A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm. | 2 |
| Software for analyzing genetic data from environmental samples to infer the presence of specific strains | 69 |
| A tool for extracting phenotypic measurements from plant images using deep learning and computer vision techniques | 41 |
| A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
| Automated high-throughput root phenotyping platform using image processing and machine learning algorithms. | 25 |
| An ultra-sensitive multi-sample variant caller for NGS data | 50 |
| An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data | 98 |
| An image analysis software package for plant phenotyping, providing a modular architecture and flexible workflow for various analysis techniques. | 671 |
| A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |
| An R package for analyzing tree-ring data to identify insect defoliators and disturbances in forests | 7 |
| An image analysis software for extracting plant root features from images | 14 |
| An enhancement tool for Ghidra's binary analysis capabilities | 289 |