VariantAnalysis

Variant analyzer

A bioinformatic pipeline for analyzing genetic variants in genomic data

A bioinformatic variant calling pipeline

GitHub

5 stars
10 watching
4 forks
Language: Jupyter Notebook
last commit: over 8 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
robertaboukhalil/ginkgo An analysis tool for single-cell copy-number variation data from sequencing experiments. 47
wittelab/orchid An annotation and machine learning framework for analyzing cancer mutations 31
sridnona/cb_sniffer A tool that identifies and annotates genetic variants in single-cell RNA sequencing data by matching mutant and reference barcodes. 44
ncsa/genomicscortextvarnextflow A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm. 2
chrisquince/desman Software for analyzing genetic data from environmental samples to infer the presence of specific strains 69
gregor-mendel-institute/aradeepopsis A tool for extracting phenotypic measurements from plant images using deep learning and computer vision techniques 41
nf-core/sarek A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. 412
computational-plant-science/dirt Automated high-throughput root phenotyping platform using image processing and machine learning algorithms. 25
iarcbioinfo/needlestack An ultra-sensitive multi-sample variant caller for NGS data 50
jefworks-lab/honeybadger An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data 98
danforthcenter/plantcv An image analysis software package for plant phenotyping, providing a modular architecture and flexible workflow for various analysis techniques. 671
bcbio/bcbio-nextgen A high-level configuration file drives parallel variant calling and analysis on sequencing data. 995
chguiterman/dfoliatr An R package for analyzing tree-ring data to identify insect defoliators and disturbances in forests 7
predictivephenomics/rhizovisionexplorer An image analysis software for extracting plant root features from images 14
reb311ion/replica An enhancement tool for Ghidra's binary analysis capabilities 289