VariantAnalysis
Variant analyzer
A bioinformatic pipeline for analyzing genetic variants in genomic data
A bioinformatic variant calling pipeline
5 stars
10 watching
4 forks
Language: Jupyter Notebook
last commit: over 8 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
wittelab/orchid | An annotation and machine learning framework for analyzing cancer mutations | 31 |
sridnona/cb_sniffer | A tool that identifies and annotates genetic variants in single-cell RNA sequencing data by matching mutant and reference barcodes. | 44 |
ncsa/genomicscortextvarnextflow | A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm. | 2 |
chrisquince/desman | Software for analyzing genetic data from environmental samples to infer the presence of specific strains | 69 |
gregor-mendel-institute/aradeepopsis | A tool for extracting phenotypic measurements from plant images using deep learning and computer vision techniques | 41 |
nf-core/sarek | A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
computational-plant-science/dirt | Automated high-throughput root phenotyping platform using image processing and machine learning algorithms. | 25 |
iarcbioinfo/needlestack | An ultra-sensitive multi-sample variant caller for NGS data | 50 |
jefworks-lab/honeybadger | An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data | 98 |
danforthcenter/plantcv | An image analysis software package for plant phenotyping, providing a modular architecture and flexible workflow for various analysis techniques. | 671 |
bcbio/bcbio-nextgen | A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |
chguiterman/dfoliatr | An R package for analyzing tree-ring data to identify insect defoliators and disturbances in forests | 7 |
predictivephenomics/rhizovisionexplorer | An image analysis software for extracting plant root features from images | 14 |
reb311ion/replica | An enhancement tool for Ghidra's binary analysis capabilities | 289 |