aradeepopsis
Plant image analyzer
A tool for extracting phenotypic measurements from plant images using deep learning and computer vision techniques
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
41 stars
6 watching
8 forks
Language: Nextflow
last commit: about 2 years ago
Linked from 1 awesome list
arabidopsis-thalianadeep-learningnextflowplant-phenotypingscikit-imagesemantic-segmentationtensorflow
Related projects:
Repository | Description | Stars |
---|---|---|
computational-plant-science/dirt | Automates root trait analysis from images of monocot and dicot roots using computer vision and image processing techniques. | 25 |
danforthcenter/plantcv | An image analysis software package for plant phenotyping, providing a modular architecture and flexible workflow for various analysis techniques. | 662 |
predictivephenomics/rhizovisionexplorer | An image analysis software for extracting plant root features from images | 14 |
abe404/root_painter | An open-source tool for training deep learning models for image analysis | 58 |
lukasvalentin/obia4rtm | An object-based image analysis tool for plant parameter retrieval from radiative transfer models using satellite data. | 18 |
jberry47/ddpsc_phenotypercv | A header-only C++11 library that provides image processing functionality for plant phenotyping using OpenCV. | 4 |
opendronemap/fieldimager | A package to analyze orthomosaic images from agricultural field trials and extract relevant information | 239 |
eco-hydro/phenofit | A package for extracting vegetation phenology from remote sensing data using machine learning and optimization techniques. | 74 |
pycroscopy/atomai | A PyTorch-based package for analyzing microscopy data with machine learning algorithms | 194 |
jgrss/cultionet | A deep learning library for image segmentation of cultivated land from satellite data | 26 |
kreshuklab/plant-seg | A tool for cell instance aware segmentation in densely packed 3D volumetric images | 97 |
csailvision/gandissect | Visualizes and understands internal representations of generative adversarial networks (GANs) to analyze their behavior and improve performance. | 1,770 |
p2irc/deepplantphenomics | A Python-based platform for plant phenotyping using deep learning and neural networks. | 135 |
apburt/treeseg | Extracts individual trees from high-density lidar point clouds using machine learning and computer vision techniques | 214 |
jliemansifry/semantic-segmentation | Develops deep learning models to classify and annotate pixel-level details in satellite images | 21 |