aradeepopsis

Plant image analyzer

A tool for extracting phenotypic measurements from plant images using deep learning and computer vision techniques

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

GitHub

41 stars
6 watching
8 forks
Language: Nextflow
last commit: about 2 years ago
Linked from 1 awesome list

arabidopsis-thalianadeep-learningnextflowplant-phenotypingscikit-imagesemantic-segmentationtensorflow

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
computational-plant-science/dirt Automates root trait analysis from images of monocot and dicot roots using computer vision and image processing techniques. 25
danforthcenter/plantcv An image analysis software package for plant phenotyping, providing a modular architecture and flexible workflow for various analysis techniques. 662
predictivephenomics/rhizovisionexplorer An image analysis software for extracting plant root features from images 14
abe404/root_painter An open-source tool for training deep learning models for image analysis 58
lukasvalentin/obia4rtm An object-based image analysis tool for plant parameter retrieval from radiative transfer models using satellite data. 18
jberry47/ddpsc_phenotypercv A header-only C++11 library that provides image processing functionality for plant phenotyping using OpenCV. 4
opendronemap/fieldimager A package to analyze orthomosaic images from agricultural field trials and extract relevant information 239
eco-hydro/phenofit A package for extracting vegetation phenology from remote sensing data using machine learning and optimization techniques. 74
pycroscopy/atomai A PyTorch-based package for analyzing microscopy data with machine learning algorithms 194
jgrss/cultionet A deep learning library for image segmentation of cultivated land from satellite data 26
kreshuklab/plant-seg A tool for cell instance aware segmentation in densely packed 3D volumetric images 97
csailvision/gandissect Visualizes and understands internal representations of generative adversarial networks (GANs) to analyze their behavior and improve performance. 1,770
p2irc/deepplantphenomics A Python-based platform for plant phenotyping using deep learning and neural networks. 135
apburt/treeseg Extracts individual trees from high-density lidar point clouds using machine learning and computer vision techniques 214
jliemansifry/semantic-segmentation Develops deep learning models to classify and annotate pixel-level details in satellite images 21