rnaseq-nf

Pipeline

A pipeline for quantifying genomic features from short read data using Nextflow and various software components.

A proof of concept of RNAseq pipeline

GitHub

74 stars
8 watching
104 forks
Language: Nextflow
last commit: almost 2 years ago
Linked from 1 awesome list

genomicsnextflowrnaseq

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
nextflow-io/crg-course-nov16A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline23
cbcrg/grape-nfA pipeline for RNA-Seq analyses using nextflow2
nextflow-io/nf-hack17An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis10
fredericlemoine/rna-pipelineA Nextflow-based pipeline for processing RNA-Seq data using Docker containers4
nf-core/smrnaseqAn automated analysis pipeline for small RNA sequencing data74
nf-core/rnafusionA bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data147
dowell-lab/rnaseq-flowA Nextflow pipeline for processing RNA-seq data8
biocorecrg/bionextflowA collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics26
iarcbioinfo/iarc-nfProvides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.48
nf-core/rnaseqAn RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data.941
cbcrg/kallisto-nfA tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow22
guigolab/grape-nfAutomated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers37
crickbabs/babs-adnaseqA Nextflow pipeline script for processing ancient DNA sequencing data.2
nextflow-io/nf-hack17-tutorialA tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines32
montilab/pipelinerA framework for defining and automating bioinformatics pipelines using Nextflow.44