pipeliner

Pipeline manager

A framework for defining and automating bioinformatics pipelines using Nextflow.

A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

GitHub

44 stars
9 watching
14 forks
Language: Nextflow
last commit: about 5 years ago
Linked from 1 awesome list

bioinformaticscomputational-biologynextflowrna-seqworkflow

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
biocorecrg/bionextflow A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics 26
bjpop/rubra A bioinformatics pipeline system that supports running workflow stages on a distributed compute cluster. 38
hmkim/workflow A Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research 9
insilicodb/pipeline-kallisto A configuration for running kallisto sequencing analysis using the Nextflow workflow management system. 3
lightforever/mlcomp A distributed framework for building and managing complex machine learning pipelines with a user-friendly interface. 188
natcap/taskgraph A Python library for managing and optimizing computational workflows with parallel processing and data reuse. 21
mfiers/moa A tool for automating bioinformatics workflows 23
crickbabs/babs-adnaseq A Nextflow pipeline script for processing ancient DNA sequencing data. 2
nextflow-io/crg-course-nov16 A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline 23
ssadedin/bpipe A tool for running and managing bioinformatics pipelines by abstracting away low-level details and providing features such as dependency tracking, transactional management, and parallelism. 230
fluidattacks/makes A framework for building and managing CI/CD pipelines and application environments with cryptographic signed dependencies. 453
kevin-hanselman/dud A lightweight tool for managing and versioning large data alongside source code in data pipelines 183
charite/ngspipeline A Nextflow-based workflow management system for processing next-generation sequencing data. 7
linkedin/brooklin A distributed system for streaming data between heterogeneous systems with high reliability and throughput at scale 920