pipeliner

Pipeline manager

A framework for defining and automating bioinformatics pipelines using Nextflow.

A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

GitHub

44 stars
9 watching
13 forks
Language: Nextflow
last commit: almost 7 years ago
Linked from 1 awesome list

bioinformaticscomputational-biologynextflowrna-seqworkflow

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
biocorecrg/bionextflowA collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics26
bjpop/rubraA bioinformatics pipeline system that supports running workflow stages on a distributed compute cluster.38
hmkim/workflowA Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research9
insilicodb/pipeline-kallistoA configuration for running kallisto sequencing analysis using the Nextflow workflow management system.3
lightforever/mlcompA distributed framework for building and managing complex machine learning pipelines with a user-friendly interface.188
natcap/taskgraphA Python library for managing and optimizing computational workflows with parallel processing and data reuse.22
mfiers/moaA tool for automating bioinformatics workflows23
crickbabs/babs-adnaseqA Nextflow pipeline script for processing ancient DNA sequencing data.2
nextflow-io/crg-course-nov16A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline23
ssadedin/bpipeA tool for running and managing bioinformatics pipelines by abstracting away low-level details and providing features such as dependency tracking, transactional management, and parallelism.233
fluidattacks/makesA framework for building and managing CI/CD pipelines and application environments with cryptographic signed dependencies.461
kevin-hanselman/dudA lightweight tool for managing and versioning large data alongside source code in data pipelines184
charite/ngspipelineA Nextflow-based workflow management system for processing next-generation sequencing data.7
linkedin/brooklinA distributed system for streaming data between heterogeneous systems with high reliability and throughput at scale931