pipeliner
Pipeline manager
A framework for defining and automating bioinformatics pipelines using Nextflow.
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
44 stars
9 watching
13 forks
Language: Nextflow
last commit: about 6 years ago
Linked from 1 awesome list
bioinformaticscomputational-biologynextflowrna-seqworkflow
Related projects:
| Repository | Description | Stars |
|---|---|---|
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
 biocorecrg/bionextflow | A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics | 26 |
 bjpop/rubra | A bioinformatics pipeline system that supports running workflow stages on a distributed compute cluster. | 38 |
 hmkim/workflow | A Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research | 9 |
 insilicodb/pipeline-kallisto | A configuration for running kallisto sequencing analysis using the Nextflow workflow management system. | 3 |
 lightforever/mlcomp | A distributed framework for building and managing complex machine learning pipelines with a user-friendly interface. | 188 |
 natcap/taskgraph | A Python library for managing and optimizing computational workflows with parallel processing and data reuse. | 22 |
 mfiers/moa | A tool for automating bioinformatics workflows | 23 |
 crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
| nextflow-io/crg-course-nov16 | A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
 ssadedin/bpipe | A tool for running and managing bioinformatics pipelines by abstracting away low-level details and providing features such as dependency tracking, transactional management, and parallelism. | 233 |
 fluidattacks/makes | A framework for building and managing CI/CD pipelines and application environments with cryptographic signed dependencies. | 461 |
 kevin-hanselman/dud | A lightweight tool for managing and versioning large data alongside source code in data pipelines | 184 |
 charite/ngspipeline | A Nextflow-based workflow management system for processing next-generation sequencing data. | 7 |
 linkedin/brooklin | A distributed system for streaming data between heterogeneous systems with high reliability and throughput at scale | 931 |