ngspipeline

NGS pipeline manager

A Nextflow-based workflow management system for processing next-generation sequencing data.

Our NGS Pipeline using Nextflow

GitHub

7 stars
8 watching
3 forks
last commit: almost 12 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
andremrsantos/next-pipes-lghmA collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab3
holtgrewe/ngs_pipelinesA suite of Nextflow-based pipelines for typical NGS processing tasks6
montilab/pipelinerA framework for defining and automating bioinformatics pipelines using Nextflow.44
iarcbioinfo/iarc-nfProvides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.48
nlguillemot/pipelinesetA utility for managing and reloading graphics pipeline states in Direct3D 1215
insilicodb/pipeline-kallistoA configuration for running kallisto sequencing analysis using the Nextflow workflow management system.3
quickube/piperAutomates creation of Kubernetes workflows based on Git branch changes22
linkedin/brooklinA distributed system for streaming data between heterogeneous systems with high reliability and throughput at scale931
crickbabs/babs-adnaseqA Nextflow pipeline script for processing ancient DNA sequencing data.2
ngless-toolkit/nglessA domain-specific language for processing next-generation sequencing data143
meissnert/nextflow-gtoolAn integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis2
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
ssadedin/bpipeA tool for running and managing bioinformatics pipelines by abstracting away low-level details and providing features such as dependency tracking, transactional management, and parallelism.233
nextflow-io/crg-course-nov16A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline23
galaxyproject/galaxyA platform for data-intensive scientific analysis and workflow management1,431