nextflow-gtool
Genomics workflow tool
An integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis
nextflow for gtool (http://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html)
2 stars
3 watching
0 forks
last commit: over 9 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
| A software framework for genomic association studies using C. elegans data | 8 |
| A collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab | 3 |
| This repository provides code and data to reproduce visualizations from a bioinformatics paper using the ggtree package. | 24 |
| A workflow repository providing tools and recipes for genome annotation using NextFlow | 20 |
| Enables efficient querying of genomic databases using a modular approach and multiple tools | 955 |
| A Nextflow pipeline implementation of the Dowell Lab ChIP-seq analysis workflow | 4 |
| An integration of NextFlow and Kallisto for automated analysis of high-throughput sequencing data | 3 |
| A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
| A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
| A Nextflow pipeline for processing RNA-seq data | 8 |
| Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
| An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |
| A Nextflow-based workflow management system for processing next-generation sequencing data. | 7 |
| A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
| A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 16 |