cegwas2-nf
GWAS tool
A software framework for genomic association studies using C. elegans data
GWA mapping with C. elegans
8 stars
9 watching
6 forks
Language: R
last commit: 9 months ago
Linked from 1 awesome list
nextflow
Related projects:
Repository | Description | Stars |
---|---|---|
| An R package for visualizing anatograms of different organisms based on tissue coordinates from publicly available data sources. | 384 |
| A comprehensive human genome-wide association study workflow for data quality control and basic association testing. | 108 |
| Enables efficient querying of genomic databases using a modular approach and multiple tools | 955 |
| An integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis | 2 |
| An implementation of logistic regression and Chi-Square genome-wide association studies protocols using homomorphic encryption for secure large-scale genomic research. | 9 |
| A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
| Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
| A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
| An open-source software tool for applying consensus clustering to multi-omic data for disease subtyping | 5 |
| An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |
| A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
| Automated pipeline for processing ChIP-seq data | 17 |
| Tools and analyses for working with Hansen et al.'s Global Forest Change dataset | 17 |
| A R package that adds flags to ggplot2 plots | 18 |
| A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 16 |