cegwas2-nf

GWAS tool

A software framework for genomic association studies using C. elegans data

GWA mapping with C. elegans

GitHub

8 stars
9 watching
6 forks
Language: R
last commit: 6 months ago
Linked from 1 awesome list

nextflow

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
jespermaag/gganatogram An R package for visualizing anatograms of different organisms based on tissue coordinates from publicly available data sources. 384
h3abionet/h3agwas A comprehensive human genome-wide association study workflow for data quality control and basic association testing. 106
pachterlab/gget Enables efficient querying of genomic databases using a modular approach and multiple tools 946
meissnert/nextflow-gtool An integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis 2
openfheorg/openfhe-genomic-examples An implementation of logistic regression and Chi-Square genome-wide association studies protocols using homomorphic encryption for secure large-scale genomic research. 8
nf-core/sarek Automated workflow for detecting germline or somatic variants in genomic sequencing data 409
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
crg-cnag/callings-nf A Nextflow pipeline for RNA sequencing variant calling with GATK best practices 132
galadrielbriere/clustomics An open-source software tool for applying consensus clustering to multi-omic data for disease subtyping 5
brwnj/smoove-nf An automation workflow for detecting structural variations in genomic data using the smoove toolset 12
evanfloden/vast-tools-nf A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data 5
guigolab/chip-nf Automated pipeline for processing ChIP-seq data 17
azvoleff/gfcanalysis Tools and analyses for working with Hansen et al.'s Global Forest Change dataset 17
ellisp/ggflags A R package that adds flags to ggplot2 plots 18
nbisweden/wgs-structvar A Nextflow pipeline for running structural variation callers on whole genome sequencing data 15