smoove-nf

Genomic SV caller

An automation workflow for detecting structural variations in genomic data using the smoove toolset

Nextflow implementation of the smoove workflow and other tools for SV calling and QC

GitHub

12 stars
3 watching
2 forks
Language: Python
last commit: about 4 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
crg-cnag/callings-nf A Nextflow pipeline for RNA sequencing variant calling with GATK best practices 132
nbisweden/wgs-structvar A Nextflow pipeline for running structural variation callers on whole genome sequencing data 15
nf-core/sarek Automated workflow for detecting germline or somatic variants in genomic sequencing data 409
evanfloden/vast-tools-nf A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data 5
iarcbioinfo/gatk4-haplotypecaller-nf Automates the process of haplotype calling from genotyped BAM files using GATK4 8
nickolasburr/rng Streams input from a file or stdin to stdout, with customizable line ranges. 31
andersenlab/cegwas2-nf A software framework for genomic association studies using C. elegans data 8
hail-is/hail A Python-based tool for analyzing genomic data in the cloud with support for batch computing and distributed queries 984
nlawlor/v-sva An interactive R application to detect and annotate hidden sources of variation in single cell RNA-seq data 7
robsyme/nf-repeatmasking Automates repeat detection and masking in genomic data analysis 13
jefworks-lab/honeybadger An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data 96
iarcbioinfo/gatk4-genotypegvcfs-nf Joint calling of genotype variants from multiple cohorts using GATK4 best practices 11
bimsbbioinfo/netsmooth Improves single cell RNA-seq data by smoothing out noise using prior information from gene interaction networks 27
zuberlab/crispr-process-nf Tools for processing CRISPR and shRNA data in a high-throughput screening workflow 3
nf-core/smrnaseq An automated analysis pipeline for small RNA sequencing data 74