nf-repeatmasking
Repeat analyzer
Automates repeat detection and masking in genomic data analysis
Nextflow workflow for automatic repeat detection, classification and masking
13 stars
3 watching
6 forks
Language: Perl
last commit: over 7 years ago
Linked from 1 awesome list
bioinformaticsgenomicsnextflowtransposable-elements
Related projects:
| Repository | Description | Stars |
|---|---|---|
| robsyme/nextflow-annotate | A workflow repository providing tools and recipes for genome annotation using NextFlow | 20 |
| robsyme/workflows-proteogenomics | Versioned and shareable computational biology workflows for proteogenomics analysis. | 2 |
 nf-core/sarek | A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
 zuberlab/crispr-process-nf | Tools for processing CRISPR and shRNA data in a high-throughput screening workflow | 3 |
 brwnj/smoove-nf | An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |
 evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
| zuberlab/mageck-nf | Analyzes multiplexed CRISPR/shRNA Screens using statistical methods | 3 |
| nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
 iarcbioinfo/mpileup-nf | Computation pipeline for calculating genomic coverage from sequencing data using samtools mpileup | 1 |
 guillaumegenthial/sequence_tagging | Named Entity Recognition model using LSTM and CRF with character embeddings | 1,947 |
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
 nmdp-bioinformatics/flow-blast-hml | Automates sequence analysis from HML files using blast algorithms | 1 |
 mhjabreel/stf-rnn | Recurrent neural network model for predicting people's next location based on spatial and temporal features | 28 |
| nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 941 |
| nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |