nextflow-annotate
Genome annotator
A workflow repository providing tools and recipes for genome annotation using NextFlow
Workflows I find helpful for fungal genome annotation
20 stars
4 watching
11 forks
Language: Perl
last commit: over 1 year ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
robsyme/nf-repeatmasking | Automates repeat detection and masking in genomic data analysis | 13 |
robsyme/workflows-proteogenomics | Versioned and shareable computational biology workflows for proteogenomics analysis. | 2 |
guigolab/fa-nf | A pipeline for annotating protein function from non-model organisms using Nextflow and various bioinformatics tools | 17 |
nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 72 |
anvlasova/fa-nf | Automated annotation pipeline for functional protein analysis in non-model organisms | 3 |
meissnert/nextflow-gtool | An integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis | 2 |
averasd/nextflow-rnastar | A Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts | 4 |
hmkim/workflow | A Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research | 9 |
evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
umcugenetics/nextflowmodules | A collection of reusable workflow modules for Nextflow | 26 |
nextflow-io/nf-hack17-tutorial | A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines | 32 |
biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing nanopore RNA sequencing data | 23 |
jtaghiyar/kronos | Tools and workflow management for large-scale genome data analysis | 19 |
nextflow-io/crg-course-nov16 | A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
brwnj/smoove-nf | An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |