FA-nf

Protein annotator

A pipeline for annotating protein function from non-model organisms using Nextflow and various bioinformatics tools

Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow

GitHub

17 stars
7 watching
4 forks
Language: Perl
last commit: over 4 years ago
Linked from 1 awesome list

bioinformaticsnextflowpipeline

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
anvlasova/fa-nfAutomated annotation pipeline for functional protein analysis in non-model organisms3
guigolab/grape-nfAutomated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers37
guigolab/chip-nfAutomated pipeline for processing ChIP-seq data17
robsyme/nextflow-annotateA workflow repository providing tools and recipes for genome annotation using NextFlow20
guigolab/ipsa-nfAn integrative pipeline for analyzing splicing events from RNA sequencing data9
nf-core/rnafusionA bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data147
evanfloden/lncrna-annotation-nfA pipeline for annotating long non-coding RNAs from RNA sequencing data using the STAR, Cufflinks, and FEELnc tools.11
cbcrg/ampa-nfAn automated pipeline for predicting protein antimicrobial regions5
nextflow-io/nf-hack17An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis10
odiogosilva/innuca-nfA software framework for implementing high-quality assembly, quality control, and annotation of bacterial genomes3
nf-core/toolsProvides a set of reusable Python functions and tools for bioinformatics and workflow management.245
evanfloden/vast-tools-nfA Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data5
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
iarcbioinfo/mpileup-nfComputation pipeline for calculating genomic coverage from sequencing data using samtools mpileup1
andersenlab/cegwas2-nfA software framework for genomic association studies using C. elegans data8