nf-hack17

Bioinformatics pipeline project

An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis

Nextflow hackathon 2017 projects

GitHub

10 stars
10 watching
2 forks
Language: Shell
last commit: about 7 years ago
Linked from 1 awesome list

hackathonnextflow

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Related projects:

Repository Description Stars
nextflow-io/nf-hack17-tutorial A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines 32
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
ncbi-hackathons/spew Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations. 26
biocorecrg/bionextflow A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics 26
iarcbioinfo/iarc-nf Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data. 47
nextflow-io/crg-course-nov16 A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline 23
hadrieng/pipelines A collection of reusable computational pipelines for bioinformatics tasks. 2
nf-core/tools Provides a set of reusable Python functions and tools for bioinformatics and workflow management. 242
cbcrg/grape-nf A pipeline for RNA-Seq analyses using nextflow 2
nf-core/rnafusion A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data 143
nmdp-bioinformatics/flow Consensus assembly and variant calling workflow utilizing Nextflow for efficient processing of biological data 12
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
ncbi-hackathons/atacflow A Nextflow-based pipeline for performing ATAC-seq analysis 14
papenfusslab/bioshake A tool for defining and compiling bioinformatics workflows in Haskell using a build system 55
fredericlemoine/rna-pipeline A Nextflow-based pipeline for processing RNA-Seq data using Docker containers 4