ATACFlow
ATAC-seq pipeline
A Nextflow-based pipeline for performing ATAC-seq analysis
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
14 stars
10 watching
10 forks
Language: Jupyter Notebook
last commit: over 7 years agoLinked from 1 awesome list
atac-seqbeta-releasejupyter-notebookncbinextflow
Related projects:
| Repository | Description | Stars |
|---|---|---|
| ncbi-hackathons/spew | Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations. | 26 |
 tobiasrausch/atacseq | An ATAC-Seq analysis pipeline written in shell script, providing tools for quality control, peak detection, and differential analysis of chromatin accessibility data. | 74 |
 nextflow-io/nf-hack17 | An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis | 10 |
 nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
 nvidia-genomics-research/atacworks | A toolkit for preprocessing and analyzing high-throughput DNA sequencing data from ATAC-seq experiments using deep learning techniques. | 128 |
 dowell-lab/rnaseq-flow | A Nextflow pipeline for processing RNA-seq data | 8 |
| nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
 crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
| nextflow-io/nf-hack17-tutorial | A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines | 32 |
 guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
| nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 199 |
 cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
| dowell-lab/chip-flow | A Nextflow pipeline implementation of the Dowell Lab ChIP-seq analysis workflow | 4 |
 bcbio/bcbio-nextgen | A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |
 qbic-pipelines/icgc-featurecounts | Automated pipeline for featureCounts on RNAseq BAM files from ICGC datasets | 3 |