chipseq
ChIP-seq processor
A bioinformatics analysis pipeline for processing ChIP-seq data
ChIP-seq peak-calling, QC and differential analysis pipeline.
199 stars
149 watching
150 forks
Language: Nextflow
last commit: 2 months ago
Linked from 1 awesome list
chipchip-seqchromatin-immunoprecipitationmacs2nextflownf-corepeak-callingpipelineworkflow
Related projects:
Repository | Description | Stars |
---|---|---|
| An automated analysis pipeline for small RNA sequencing data | 74 |
| An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 941 |
| Automated pipeline for processing ChIP-seq data | 17 |
| A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
| Bioinformatics pipeline for analyzing DNA methylation data from bisulfite sequencing | 148 |
| A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools. | 412 |
| Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 152 |
| An analysis pipeline for whole genome sequencing of fungal organisms. | 38 |
| A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
| Tools for processing CRISPR and shRNA data in a high-throughput screening workflow | 3 |
| A Nextflow pipeline implementation of the Dowell Lab ChIP-seq analysis workflow | 4 |
| An assembly and variant calling pipeline for viral samples | 128 |
| A Nextflow pipeline for processing RNA-seq data | 8 |
| An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow | 63 |
| A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |