RNAseq-Flow

RNA seq processor

A Nextflow pipeline for processing RNA-seq data

Nextflow pipeline for processing RNA-seq data

GitHub

8 stars
4 watching
5 forks
Language: Nextflow
last commit: over 1 year ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
dowell-lab/chip-flow A Nextflow pipeline implementation of the Dowell Lab ChIP-seq analysis workflow 4
nf-core/smrnaseq An automated analysis pipeline for small RNA sequencing data 74
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
griffithlab/rnaseq_tutorial An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud 1,337
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
fredericlemoine/rna-pipeline A Nextflow-based pipeline for processing RNA-Seq data using Docker containers 4
nf-core/rnaseq An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. 916
cbcrg/kallisto-nf A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow 22
nextflow-io/crg-course-nov16 A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline 23
cbcrg/grape-nf A pipeline for RNA-Seq analyses using nextflow 2
biocorecrg/mop2 A Nextflow-based workflow for processing and analyzing nanopore RNA sequencing data 23
pachterlab/kallistobustools A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. 115
nf-core/rnafusion A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data 143
nf-core/chipseq A bioinformatics analysis pipeline for processing ChIP-seq data 194
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97