kallistobustools

pachterlab/kb_python157

RNA seq processor

A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data.

pachterlab/kallisto663

RNA quantification framework

A software framework for efficiently quantifying RNA-seq data from sequencing reads.

cbcrg/kallisto-nf22

RNA seq pipeline

A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow

kharchenkolab/dropest88

Single-cell RNA-seq analysis pipeline

A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments

griffithlab/rnaseq_tutorial1.3K

RNA-seq pipeline

An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud

pachterlab/cwgflhgcchap_20212

Cell RNA-Seq Analysis

Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types.

dowell-lab/rnaseq-flow8

RNA seq processor

A Nextflow pipeline for processing RNA-seq data

pachterlab/mbgblhgp_201923

Data analysis script

Code repository for reproducing RNA-seq data analysis results from a specific scientific paper

guigolab/grape-nf37

RNA-seq pipeline

Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers

yeolab/outrigger65

Splice analyzer

Automates detection and quantification of alternative splicing events from RNA seq data using graph databases.

yjzhang/uncurl_python15

RNA Seq Analyzer

Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms

drisso/bioc2016singlecell76

Cell analysis software

Analyzing single-cell RNA-seq data using R and Bioconductor tools

snakemake-workflows/single-cell-rna-seq100

RNA-seq analyzer

A workflow generator for single-cell RNA-seq data analysis

rabadanlab/sctda7

Single-cell RNA-seq analyzer

An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations

hoohm/dropseqpipe147

RNASeq pipeline

A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots.