kallisto

RNA quantification framework

A software framework for efficiently quantifying RNA-seq data from sequencing reads.

Near-optimal RNA-Seq quantification

GitHub

656 stars
48 watching
172 forks
Language: C
last commit: 8 days ago
Linked from 1 awesome list

kallistopseudoalignmentrna-seq

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
pachterlab/kallistobustools A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. 115
pachterlab/kb_python A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. 153
cbcrg/kallisto-nf A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow 22
pachterlab/cwgflhgcchap_2021 Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. 2
griffithlab/rnaseq_tutorial An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud 1,337
nf-core/rnaseq An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. 916
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
pachterlab/mbgblhgp_2019 Code repository for reproducing RNA-seq data analysis results from a specific scientific paper 23
vccri/falco A cloud-based framework for streamlined single-cell RNA-seq data analysis with simplified access to computational and storage resources. 38
cbcrg/grape-nf A pipeline for RNA-Seq analyses using nextflow 2
dtm2451/dittoseq A suite of functions for analyzing and visualizing RNA sequencing data 190
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
lingfeiwang/normalisr A software framework for analyzing single-cell RNA sequencing data 18
yoseflab/scone Tools for quality control and normalization of single-cell RNA-seq data 53
kharchenkolab/dropest A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments 88