MBGBLHGP_2019

Data analysis script

Code repository for reproducing RNA-seq data analysis results from a specific scientific paper

Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"

GitHub

23 stars
9 watching
3 forks
Language: Jupyter Notebook
last commit: almost 4 years ago

Related projects:

Repository Description Stars
pachterlab/cwgflhgcchap_2021 Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. 2
pachterlab/kb_python A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. 153
pachterlab/gget Enables efficient querying of genomic databases using a modular approach and multiple tools 946
pachterlab/kallistobustools A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. 115
pachterlab/sleuth_paper_analysis A collection of R code to reproduce analyses from the sleuth paper 16
pachterlab/pcca A software project that performs statistical analysis on biological data using Principal Component Correlation Analysis (PCCA) and related methods. 18
pachterlab/sircel A tool for identifying and quantifying cell barcodes from single-cell genomics sequencing data. 41
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
nghiavtr/bpsc A package for analyzing single-cell RNA-seq data using a beta-Poisson model. 16
rglab/mast Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models 228
gao-lab/cell_blast An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches. 86
guigolab/ipsa-nf An integrative pipeline for analyzing splicing events from RNA sequencing data 9
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
yjzhang/uncurl_python Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms 15
bcbio/bcbio-nextgen A high-level configuration file drives parallel variant calling and analysis on sequencing data. 994