nextflow-kallisto
Analysis pipeline tool
An integration of NextFlow and Kallisto for automated analysis of high-throughput sequencing data
3 stars
8 watching
0 forks
last commit: over 9 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
averasd/nextflow-rnastar | A Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts | 4 |
insilicodb/pipeline-kallisto | A configuration for running kallisto sequencing analysis using the Nextflow workflow management system. | 3 |
cbcrg/kallisto-nf | A tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow | 22 |
andremrsantos/next-pipes-lghm | A collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab | 3 |
crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
nextflow-io/crg-course-nov16 | A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
pachterlab/kallistobustools | A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. | 115 |
skner/iasi-pipe | A data pipeline framework for processing Ion Torrent sequencing data | 2 |
nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 72 |
hadrieng/pipelines | A collection of reusable computational pipelines for bioinformatics tasks. | 2 |
meissnert/nextflow-gtool | An integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis | 2 |
montilab/pipeliner | A framework for defining and automating bioinformatics pipelines using Nextflow. | 44 |
evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
iarcbioinfo/iarc-nf | Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data. | 47 |
nmdp-bioinformatics/flow-blast-hml | Automates sequence analysis from HML files using blast algorithms | 1 |