nextflow-kallisto

Analysis pipeline tool

An integration of NextFlow and Kallisto for automated analysis of high-throughput sequencing data

GitHub

3 stars
8 watching
0 forks
last commit: about 11 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
averasd/nextflow-rnastarA Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts4
insilicodb/pipeline-kallistoA configuration for running kallisto sequencing analysis using the Nextflow workflow management system.3
cbcrg/kallisto-nfA tool suite implementing Kallisto and Sleuth RNA-seq analysis pipelines in Nextflow22
andremrsantos/next-pipes-lghmA collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab3
crickbabs/babs-adnaseqA Nextflow pipeline script for processing ancient DNA sequencing data.2
nextflow-io/crg-course-nov16A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline23
pachterlab/kallistobustoolsA workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools.115
skner/iasi-pipeA data pipeline framework for processing Ion Torrent sequencing data2
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
hadrieng/pipelinesA collection of reusable computational pipelines for bioinformatics tasks.2
meissnert/nextflow-gtoolAn integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis2
montilab/pipelinerA framework for defining and automating bioinformatics pipelines using Nextflow.44
evanfloden/vast-tools-nfA Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data5
iarcbioinfo/iarc-nfProvides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.48
nmdp-bioinformatics/flow-blast-hmlAutomates sequence analysis from HML files using blast algorithms1