bpipe
Pipeline manager
A tool for running and managing bioinformatics pipelines by abstracting away low-level details and providing features such as dependency tracking, transactional management, and parallelism.
Bpipe - a tool for running and managing bioinformatics pipelines
233 stars
18 watching
57 forks
Language: Groovy
last commit: almost 2 years agoLinked from 1 awesome list
Related projects:
| Repository | Description | Stars |
|---|---|---|
| A bioinformatics pipeline system that supports running workflow stages on a distributed compute cluster. | 38 | |
| A tool for managing data science pipelines by automating build, testing, and deployment processes while ensuring correctness and performance. | 58 | |
| A distributed system for streaming data between heterogeneous systems with high reliability and throughput at scale | 931 | |
| A Python library for managing and optimizing computational workflows with parallel processing and data reuse. | 22 | |
| A framework for defining and automating bioinformatics pipelines using Nextflow. | 44 | |
| A lightweight tool for managing and versioning large data alongside source code in data pipelines | 184 | |
| A package implementing pipelines using goroutines to manage concurrency in Go applications. | 56 | |
| A platform for data-intensive scientific analysis and workflow management | 1,431 | |
| A tool for monitoring and managing complex IT infrastructures by aggregating check results from Nagios/Icinga and creating hierarchical business processes. | 1 | |
| A system for creating and running pipelines on distributed compute resources using a workflow management system. | 53 | |
| A comprehensive pipeline management system for VFX, animation, and game production workflows | 249 | |
| A command-line tool for automating data processing and uploads from Planet's API to Google Earth Engine. | 42 | |
| A framework for building and managing CI/CD pipelines and application environments with cryptographic signed dependencies. | 461 | |
| A comprehensive toolset for managing OSGi bundles and dependencies | 533 | |
| An MLOps Python library that enables data scientists to deploy and orchestrate machine learning pipelines for production-ready inference. | 117 |