ngs_pipelines
NGS pipeline suite
A suite of Nextflow-based pipelines for typical NGS processing tasks
Nextflow-based pipelines for typical NGS processing tasks
6 stars
3 watching
4 forks
Language: Groovy
last commit: over 10 years ago
Linked from 1 awesome list
Related projects:
| Repository | Description | Stars |
|---|---|---|
 andremrsantos/next-pipes-lghm | A collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab | 3 |
 charite/ngspipeline | A Nextflow-based workflow management system for processing next-generation sequencing data. | 7 |
 nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 16 |
 iarcbioinfo/iarc-nf | Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data. | 48 |
 ngless-toolkit/ngless | A domain-specific language for processing next-generation sequencing data | 143 |
 nextflow-io/rnaseq-nf | A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
 guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 calebwin/pipelines | A language and runtime for crafting massively parallel data pipelines | 375 |
 googlecloudplatform/dataflowtemplates | A collection of pre-implemented data pipelines using Google Cloud Dataflow and Apache Beam | 1,169 |
 hyfather/pipeline | A package implementing pipelines using goroutines to manage concurrency in Go applications. | 56 |
 hadrieng/pipelines | A collection of reusable computational pipelines for bioinformatics tasks. | 2 |
 crickbabs/babs-adnaseq | A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
 pwwang/pipen | A Python-based workflow automation framework that enables easy creation of data processing pipelines | 105 |
 hhio618/golem-ci | A decentralized task pipeline on Golem.network using Python. | 5 |
 gabriella439/pipes | A lightweight stream processing library that builds and connects reusable streaming components using Haskell | 489 |