pangenome
sequence graph builder
Constructs a graph from a collection of genetic sequences while preserving large-scale variation
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
78 stars
62 watching
16 forks
Language: Nextflow
last commit: about 1 month ago
Linked from 1 awesome list
nextflownf-corepangenomepipelineworkflow
Related projects:
Repository | Description | Stars |
---|---|---|
nf-core/eager | Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 148 |
nf-core/sarek | Automated workflow for detecting germline or somatic variants in genomic sequencing data | 409 |
nf-core/mag | An assembly and binning pipeline for analyzing metagenomes | 216 |
nf-core/tools | Provides a set of reusable Python functions and tools for bioinformatics and workflow management. | 242 |
nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 15 |
cdcgov/mycosnp-nf | An analysis pipeline for whole genome sequencing of fungal organisms. | 37 |
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
nf-core/hlatyping | An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow | 63 |
crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
nf-core/viralrecon | An assembly and variant calling pipeline for viral samples | 124 |
nf-core/modules | A repository of pre-built tool modules for efficient pipeline development in Nextflow. | 283 |
torch/nngraph | Graphical computation library for building neural network architectures | 299 |
iarcbioinfo/gvcf_pipeline-nf | Generates GVCF from BAM files using GenomeAnalysisTK with realignment and recalibration steps | 4 |
patrick-kidger/equinox | A JAX-based library for building and running neural networks with ease. | 2,118 |
nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |