scirpy
Immune receptor analysis tool
Analyzes single-cell TCR and BCR data from scRNA-seq using Python
A scanpy extension to analyse single-cell TCR and BCR data.
222 stars
10 watching
35 forks
Language: Python
last commit: 2 months ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
| A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |
| An open-source Python pipeline for processing single-cell RNA sequencing data to recover T cell receptor sequences. | 26 |
| Probabilistic analysis tools for single-cell omics data | 1,270 |
| A software framework for analyzing single-cell RNA sequencing data | 18 |
| Tool for integrated analysis of single-cell RNAseq data and immune receptor profiling data | 20 |
| A toolkit for analyzing single-cell immune data from various formats using machine learning and bioinformatics techniques. | 312 |
| A Python library for analyzing and visualizing spatial molecular data from single-cell genomics and tissue images | 447 |
| An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
| An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
| An open-source R package providing tools and methods for analyzing single cell RNA-seq data | 217 |
| Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
| A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
| A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 60 |
| An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 125 |
| Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |