squidpy
Spatial analysis library
A Python library for analyzing and visualizing spatial molecular data from single-cell genomics and tissue images
Spatial Single Cell Analysis in Python
447 stars
10 watching
83 forks
Language: Python
last commit: 2 months ago
Linked from 1 awesome list
data-visualizationimage-analysissingle-cell-genomicssingle-cell-rna-seqspatial-analysisspatial-transcriptomicssquidpy
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
| scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |
| scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
| scverse/scirpy | Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 222 |
 dataverselabs/pyinterpolate | A Python package for performing spatial interpolation and analysis using various techniques | 157 |
 rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
 pysal/pysal | A comprehensive Python library for geospatial data science and analysis, providing tools for spatial statistics, graph construction, and exploratory data analysis. | 1,346 |
 rraadd88/htsimaging | A Python package for analyzing high-throughput single-cell imaging data | 5 |
 qifeidkn/stagate | A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder | 41 |
 cbib/dypfish | A Python library for statistical analysis of mRNA and protein distributions in single cell confocal images | 2 |
 quant-aq/py-smps | A Python library for analyzing and visualizing data from various aerosol sizing instruments | 34 |
 makepath/xarray-spatial | A Python library for efficient raster analysis and processing of spatial data | 848 |
 earthlab/earthpy | A Python package for simplifying spatial data manipulation and analysis | 512 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |
 fish-quant/big-fish | A toolbox for analyzing microscopy images of cells labeled with single-molecule fluorescent in situ hybridization (smFISH) tags. | 58 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 60 |