cellar
Single-cell analysis software
An interactive software tool for analyzing single-cell omics data
Interactive software tool for the assignment of cell types in single-cell studies.
32 stars
2 watching
5 forks
Language: Python
last commit: over 3 years agoLinked from 1 awesome list
clusteringcodexgenomicsgenomics-visualizationguipythonsc-atac-seqsc-rna-seqsinglecellspatial-transcriptomics
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 60 |
 cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 dawe/schist | An interface to perform nested stochastic block model analysis on single-cell data using graph-tool methods. | 32 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
 asncd/mimosca | A tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics | 87 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
 eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
 robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
 timoast/sinto | Tools for analyzing aligned single-cell data from sequencing experiments | 118 |
 pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
| scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |