sinto

Single-cell data processor

Tools for analyzing aligned single-cell data from sequencing experiments

Tools for single-cell data processing

GitHub

118 stars
2 watching
25 forks
Language: Python
last commit: 6 months ago
Linked from 1 awesome list

bioinformaticssingle-cell

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
iosonofabio/singlet Analyzes single cell RNA sequence data with quantitative phenotypes 13
yoseflab/trapes Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. 14
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
euxhenh/cellar An interactive software tool for analyzing single-cell omics data 31
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
kenlaulab/dropkick Automated cell filtering tool for single-cell RNA sequencing data analysis 24
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
rglab/mast Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models 228
dawe/schist An interface to perform nested stochastic block model analysis on single-cell data using graph-tool methods. 32
rraadd88/htsimaging A Python package for analyzing high-throughput single-cell imaging data 5
yunshun/singlecellworkshop An educational workshop on single-cell RNA-seq analysis using the Seurat R package 0
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
xmc811/scillus A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. 53
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
agitter/single-cell-pseudotime Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data 406