single-cell-pseudotime
by agitter
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
AI summary
Cell ordering algorithm catalog
Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data
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Similar projects
Found by comparing what the projects do, not just their names.
Gene orderer
Identifies genes that maintain pseudotime ordering in single-cell RNA-seq data
Pseudotime inference
A probabilistic framework for inferring pseudotimes from single-cell gene expression data and understanding the underlying regulatory mechanisms.
Cell alignment algorithm
An algorithm for aligning cells along differentiation trajectories from single cell data
Trajectory analysis
Analyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression.
Cell data analyzer
Probabilistic analysis tools for single-cell omics data
Cell assigner
Automated assignment of cell types in single-cell RNA-seq data based on marker genes and patient/batch effects
Single-cell RNA-seq guide
Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis
Single-cell analyzer
An R-based web application for guided single-cell RNA-seq data analysis and clustering
Cell annotator
Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes
Data analyzer
Analyzes single cell RNA sequence data with quantitative phenotypes
Clonal analyzer
Tools for visualizing and analyzing clonal expansion in immune cell populations
Population dynamics analyzer
A software framework for analyzing single-cell RNA-seq time series data to infer population dynamics.
Single-cell data processor
Tools for analyzing aligned single-cell data from sequencing experiments
Cell trajectory inference
An R package implementing an algorithm for inferring cell trajectories based on gene expression data
RNA-seq analyzer
A workflow generator for single-cell RNA-seq data analysis
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