ouija
Pseudotime inference
A probabilistic framework for inferring pseudotimes from single-cell gene expression data and understanding the underlying regulatory mechanisms.
Descriptive probabilistic marker gene approach to single-cell pseudotime inference
28 stars
6 watching
3 forks
Language: R
last commit: almost 7 years agoLinked from 1 awesome list
bayesian-methodsfactor-analysisgene-expressionsingle-cell
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| kieranrcampbell/phenopath | A tool for inferring genomic trajectories from expression data with environmental and genetic covariates | 10 |
 agitter/single-cell-pseudotime | Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data | 412 |
| kieranrcampbell/mfa | Infer bifurcations in single-cell data using Bayesian methods and hierarchical mixture modelling | 5 |
| kieranrcampbell/clonealign | A software package that uses Bayesian inference to assign gene expression estimates from single-cell RNA-seq and DNA-seq data to specific cancer clones. | 32 |
 cabsel/sincerities | Infers gene regulatory networks from time-stamped single cell transcriptional expression profiles using a statistical method | 12 |
 rlouf/mcx | Tools and methods for Bayesian deep learning using probabilistic programming. | 328 |
 wmacnair/psupertime | Identifies genes that maintain pseudotime ordering in single-cell RNA-seq data | 38 |
| kieranrcampbell/embeddr | Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
 sktime/skpro | A unified framework for probabilistic regression and prediction with Python-based tools. | 250 |
 robinthibaut/skbel | A Python framework for Bayesian inference and regression using Gaussian processes. | 24 |
 kristoff-it/redis-cuckoofilter | A Redis module implementing a probabilistic data structure for efficient membership testing and deletion of items without holding the entire set in memory. | 231 |
 google/causalimpact | An R package for estimating the effect of an intervention on time series data | 1,720 |
 zji90/tscan | Software tool for analyzing single-cell RNA-seq data | 37 |
 rmcelreath/statrethinking_winter2019 | A repository of statistical modeling materials and resources for an R course on Bayesian inference | 2,018 |
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |