psupertime
Gene orderer
Identifies genes that maintain pseudotime ordering in single-cell RNA-seq data
psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
38 stars
4 watching
13 forks
Language: R
last commit: over 3 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 agitter/single-cell-pseudotime | Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data | 412 |
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |
 kieranrcampbell/embeddr | Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
 wycwycpku/rscore | Tools and utilities for single-cell RNA-seq data analysis with network features | 25 |
 immcore/is-cellr | A web-based Shiny application for analyzing single-cell RNA sequencing data | 23 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 100 |
 pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
 yoseflab/trapes | Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 marchinilab/dropsim | A tool for simulating single-cell RNA sequencing data for research purposes. | 5 |
| kieranrcampbell/ouija | A probabilistic framework for inferring pseudotimes from single-cell gene expression data and understanding the underlying regulatory mechanisms. | 28 |
 zji90/tscan | Software tool for analyzing single-cell RNA-seq data | 37 |
| pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 157 |
 irrationone/cellassign | Automated assignment of cell types in single-cell RNA-seq data based on marker genes and patient/batch effects | 197 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |