mfa
Bifurcation analysis
Infer bifurcations in single-cell data using Bayesian methods and hierarchical mixture modelling
Probabilistic inference of single-cell bifurcations
5 stars
6 watching
3 forks
Language: R
last commit: over 4 years agoLinked from 1 awesome list
bifurcationfactor-analysismixture-modellingsingle-cell
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| kieranrcampbell/ouija | A probabilistic framework for inferring pseudotimes from single-cell gene expression data and understanding the underlying regulatory mechanisms. | 28 |
| kieranrcampbell/embeddr | Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
 pimentel/scca-bc | Analyzes data to identify linear relationships and groups them into clusters | 2 |
 judyboon/bass | An implementation of a Bayesian factor analysis model with structured sparsity priors for multivariate data | 20 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
| kieranrcampbell/clonealign | A software package that uses Bayesian inference to assign gene expression estimates from single-cell RNA-seq and DNA-seq data to specific cancer clones. | 32 |
| kieranrcampbell/phenopath | A tool for inferring genomic trajectories from expression data with environmental and genetic covariates | 10 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 94 |
 ucarlab/iasva | Analyzes correlated hidden factors from single-cell transcriptomes to identify biological variation | 8 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 rmcelreath/statrethinking_winter2019 | A repository of statistical modeling materials and resources for an R course on Bayesian inference | 2,018 |
 azvoleff/gfcanalysis | Tools and analyses for working with Hansen et al.'s Global Forest Change dataset | 17 |
 nredell/shapflex | A package for computing asymmetric Shapley values to assess causality in machine learning models | 72 |
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |