pseudodynamics

Population dynamics analyzer

A software framework for analyzing single-cell RNA-seq time series data to infer population dynamics.

Dynamic models for single-cell RNA-seq time series.

GitHub

39 stars
7 watching
6 forks
Language: Jupyter Notebook
last commit: almost 8 years ago
Linked from 1 awesome list

population-dynamicssingle-cell-analysissingle-cell-rna-seqtime-series

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
theislab/scveloAnalyzes single-cell RNA velocity data to infer cellular dynamics and regulatory changes420
phoenixding/scdiffAnalyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes.28
theislab/kbranchesA software package to identify regions of interest in single-cell differentiation trajectories5
johannfaouzi/pytsA Python package for time series classification and analysis1,781
agitter/single-cell-pseudotimeCatalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data412
x-datainitiative/tickA Python module for statistical learning with an emphasis on time-dependent modeling, providing tools for machine learning, point-process modeling, and optimization.495
mathlab/pydmdAnalyzes complex datasets to extract underlying dynamics and coherent structures77
rafa-rod/pytrendseriesA Python library for detecting trends in time series data and analyzing their characteristics.128
statomics/zinbwavezingerA software framework for integrating zingeR with ZINB-WaVE weights for RNA-seq data analysis23
iosonofabio/singletAnalyzes single cell RNA sequence data with quantitative phenotypes13
rjt1990/pydata2016-sanfranciscoAn analysis of time series methods using PyFlux library and incorporating NFL prediction model.23
theislab/single-cell-tutorialProvides a comprehensive tutorial and workflow for single-cell RNA-seq analysis1,419
tinevez/msdanalyzerAnalyzes particle movement patterns over time to determine the mode of displacement and estimate parameters such as diffusion coefficient.36
wildlife-dynamics/ecoscopeA software package for analyzing and visualizing wildlife movement data and environmental conservation data26
yoseflab/trapesAlgorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences.14