pseudodynamics
Population dynamics analyzer
A software framework for analyzing single-cell RNA-seq time series data to infer population dynamics.
Dynamic models for single-cell RNA-seq time series.
39 stars
7 watching
6 forks
Language: Jupyter Notebook
last commit: about 6 years ago
Linked from 1 awesome list
population-dynamicssingle-cell-analysissingle-cell-rna-seqtime-series
Related projects:
Repository | Description | Stars |
---|---|---|
theislab/scvelo | Analyzes single-cell RNA velocity data to infer cellular dynamics and regulatory changes | 418 |
phoenixding/scdiff | Analyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes. | 28 |
theislab/kbranches | A software package to identify regions of interest in single-cell differentiation trajectories | 5 |
johannfaouzi/pyts | A Python package for time series classification and analysis | 1,772 |
agitter/single-cell-pseudotime | Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data | 406 |
x-datainitiative/tick | A Python module for statistical learning with an emphasis on time-dependent modeling, providing tools for machine learning, point-process modeling, and optimization. | 491 |
mathlab/pydmd | Analyzes complex datasets to extract underlying dynamics and coherent structures | 77 |
rafa-rod/pytrendseries | A Python library for detecting trends in time series data and analyzing their characteristics. | 126 |
statomics/zinbwavezinger | A software framework for integrating zingeR with ZINB-WaVE weights for RNA-seq data analysis | 23 |
iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
rjt1990/pydata2016-sanfrancisco | An analysis of time series methods using PyFlux library and incorporating NFL prediction model. | 23 |
theislab/single-cell-tutorial | Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis | 1,395 |
tinevez/msdanalyzer | Analyzes particle movement patterns over time to determine the mode of displacement and estimate parameters such as diffusion coefficient. | 36 |
wildlife-dynamics/ecoscope | A software package for analyzing and visualizing wildlife movement data and environmental conservation data | 25 |
yoseflab/trapes | Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |