SLICER
by jw156605
SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0975-3
AI summary
Cell trajectory inference
An R package implementing an algorithm for inferring cell trajectories based on gene expression data
- stars
- 12
- forks
- 6
- watching
- 4
- awesome list
- 1
Similar projects
Found by comparing what the projects do, not just their names.
Trajectory analyzer
An R package and Python implementation for analyzing developmental trajectories in single-cell RNA sequencing data
Trajectory analyzer
A software package to identify regions of interest in single-cell differentiation trajectories
Genomic trajectory inference
A tool for inferring genomic trajectories from expression data with environmental and genetic covariates
Trajectory inference toolkit
Supports the development and benchmarking of trajectory inference methods in single-cell biology
Trajectory analysis
Analyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression.
Trajectory analyzer
Analyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes.
cell network inference tool
An R package that infers cell-cell communication and ligand-receptor-target networks from spatially resolved transcriptomic data
Trajectory analyzer
A tool to identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations
Cell ordering algorithm catalog
Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data
Trajectory analyzer
Analyzes single-cell measurements to infer morphing trajectories and their associated regulation.
Cell alignment algorithm
An algorithm for aligning cells along differentiation trajectories from single cell data
Cell lineage inference
An algorithmic framework for inferring cell lineages from gene expression data through multiple rounds of downsampling and clustering, followed by consensus clustering and graph construction.
Cell shape analyzer
Analyzes 3D cell shape features using deep learning for cancer research
Trajectory analyzer
Analyzes molecular dynamics trajectories to infer structural properties of molecules
Transcriptomics analysis tool
Software package for cell type identification and differential expression in spatial transcriptomics
Featured in 1 awesome list
Each link jumps to the spot where the list mentions SLICER.
